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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
THCA cis rs6088813 1 rs6088813 chr20:33975181 CEP250 chr20:34042996-34099802:+ -0.15 -3.37 0.000804 Height
THCA cis rs6088813 1 rs6088813 chr20:33975181 CPNE1 chr20:34213968-34262539:- 0.3 5.95 5.17E-9 Height
THCA cis rs6088813 1 rs6088813 chr20:33975181 GDF5 chr20:33897002-34042568:- -0.18 -3.81 0.000154 Height
THCA cis rs6088813 1 rs6088813 chr20:33975181 UQCC chr20:33890383-33999833:- 0.32 10.23 2.48E-22 Height
THCA cis rs6088813 1 rs6088815 chr20:33976474 CEP250 chr20:34042996-34099802:+ -0.15 -3.37 0.000804 Height
THCA cis rs6088813 1 rs6088815 chr20:33976474 CPNE1 chr20:34213968-34262539:- 0.3 5.89 7.12E-9 Height
THCA cis rs6088813 1 rs6088815 chr20:33976474 GDF5 chr20:33897002-34042568:- -0.16 -3.55 0.000429 Height
THCA cis rs6088813 1 rs6088815 chr20:33976474 UQCC chr20:33890383-33999833:- 0.32 10.28 1.62E-22 Height
THCA cis rs6088813 1 rs6088816 chr20:33982435 CEP250 chr20:34042996-34099802:+ -0.15 -3.46 0.000592 Height
THCA cis rs6088813 1 rs6088816 chr20:33982435 CPNE1 chr20:34213968-34262539:- 0.31 6.02 3.39E-9 Height
THCA cis rs6088813 1 rs6088816 chr20:33982435 GDF5 chr20:33897002-34042568:- -0.19 -4.13 4.21E-5 Height
THCA cis rs6088813 1 rs6088816 chr20:33982435 UQCC chr20:33890383-33999833:- 0.32 10.23 2.44E-22 Height
THCA cis rs6088813 1 rs6088820 chr20:33987298 CPNE1 chr20:34213968-34262539:- 0.31 5.96 4.77E-9 Height
THCA cis rs6088813 1 rs6088820 chr20:33987298 GDF5 chr20:33897002-34042568:- -0.18 -3.93 9.73E-5 Height
THCA cis rs6088813 1 rs6088820 chr20:33987298 UQCC chr20:33890383-33999833:- 0.32 10.16 4.41E-22 Height